Season 1
01. Ninjutsu Gakuen Entrance
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02. The Kunoichi Class is Terrible
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03. A Strange Ninja
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04. Gakuenchou's Thoughts
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05. Shinbei Disappeared
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06. The Puzzle of the Two-faced Ninja
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07. Golden Week
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08. Shinbei is Suspect
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09. The Swordsman - Hanabusa Makinosuke
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10. Who is the Greatest?
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11. Sneak Into the Kunoichi Classroom
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12. Shinbei is Missing
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13. The Shinobi Genius
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14. Taiji the Thief
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15. The Big Contest
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16. Magnificent Friendship
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17. Misshi Shinkurou
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18. Run to Nameko Castle
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19. The Pirate who Couldn't Swim
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20. Lovesick
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21. Yamada-sensei is the Target
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22. Combination Class
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23. Kinoko Mountain Juudan Practice
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24. Once Again, the Swordsman Hanabusa Makinosuke
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25. My Father's Killer
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26. There'll Be No Summer Vacation
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27. Gakuenchou's Wallscroll
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28. Message from God
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29. The Lord of Maitake Castle
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30. Steal the Rations!
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31. Daisan-kyoueimaru's Ship
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32. Hieta Happousai
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33. Shinbei's Apology
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34. Many Kinds of Autumn
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35. Troubled People
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36. The Famous Sword Gokurakumaru
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37. The Missing Ricebowl
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38. Shindemohashirou's Mansion
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39. The Excellent Little Brother
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40. The Phantom Mushroom
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41. Summer Vacation Senility
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42. The Transfer Student of Rumors
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43. Tensaimaru and Shuusaimaru
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44. An Autumn Wind Pierces the Body
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45. Wind, Woods, Fire and Mountain
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46. Junko and Junichi
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47. The Pot of Treasure
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48. A Greedy Mistake
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49. Nintama Helpful Sword?
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50. Gakuencho's Soup
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51. The Shy Ninja
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52. The Nervous Ninja
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53. Save Ichinen-hagumi!
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54. Kirimaru is Bothered
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55. The Stolen Sign
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56. The Secret of the Sign
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57. The Princess is?
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58. The Part-time Mountain Bandit
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59. Kurokoge Panzou
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60. The Piece of Tatami
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61. Mom Comes to the School
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62. Dad's Success
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63. The Poison Under the Floor
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64. Kiri-chan's Mistake
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65. The Shuriken Contest
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66. The Burning Menu
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67. It's Fake Money!
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68. Who is the Criminal?
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69. The Stolen Gun
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70. Showdown! Dokutake Castle
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71. Nintama Make-up Exam
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72. Goldfish Yaai!
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73. The Cafeteria is Taken!
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74. It's a Hotspring!
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75. Hemuhemu is Missing!
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76. Give Back Hemuhemu!
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77. To Sausage Temple!
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78. Beat the Second Year Students!
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79. The Ridicoulously Strong Gang of Theives
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80. Find the Weak Point!
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81. I'm Full!
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82. Be Cold-Hearted!
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83. Obachan Catches a Cold!
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84. Kirimaru's Big Profit
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85. I Want to be a Teacher
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86. The Beginning of a Beautiful Day
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87. Kirichan's Part-time Jobs
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88. Kirichan's Greed
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89. Strong Shinbei
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90. The Failure Ninja
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91. And the greatest is?
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